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  5. AT2G40830

AT2G40830 (RHC1A)


Aliases : RHC1A

Description : RING-H2 finger C1A


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40830

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271240 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
AT3G30460 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Gb_12946 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g49550.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
LOC_Os02g52870.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 Archaeplastida
LOC_Os11g37230.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10428335g0020 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Solyc05g007895.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.01 Archaeplastida
Zm00001e009866_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023449_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
Zm00001e036731_P001 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e038199_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IDA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000026 alpha-1,2-mannosyltransferase activity IEP Neighborhood
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000813 ESCRT I complex IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003973 (S)-2-hydroxy-acid oxidase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004376 glycolipid mannosyltransferase activity IEP Neighborhood
MF GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity IEP Neighborhood
MF GO:0004644 phosphoribosylglycinamide formyltransferase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005343 organic acid:sodium symporter activity IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
MF GO:0008508 bile acid:sodium symporter activity IEP Neighborhood
MF GO:0008864 formyltetrahydrofolate deformylase activity IEP Neighborhood
MF GO:0008891 glycolate oxidase activity IEP Neighborhood
BP GO:0009635 response to herbicide IEP Neighborhood
BP GO:0009636 response to toxic substance IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0010084 specification of animal organ axis polarity IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015125 bile acid transmembrane transporter activity IEP Neighborhood
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0030148 sphingolipid biosynthetic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0036503 ERAD pathway IEP Neighborhood
MF GO:0045140 inositol phosphoceramide synthase activity IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
MF GO:0070300 phosphatidic acid binding IEP Neighborhood
BP GO:0080148 negative regulation of response to water deprivation IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140161 monocarboxylate:sodium symporter activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901371 regulation of leaf morphogenesis IEP Neighborhood
BP GO:1901562 response to paraquat IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000025 regulation of leaf formation IEP Neighborhood
BP GO:2000070 regulation of response to water deprivation IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 189 231
No external refs found!