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  5. Gb_27816

Gb_27816


Description : Pentatricopeptide repeat-containing protein At1g71210, mitochondrial OS=Arabidopsis thaliana (sp|q8gza6|pp113_arath : 429.0)


Gene families : OG0006096 (Archaeplastida) Phylogenetic Tree(s): OG0006096_tree ,
OG_05_0004418 (LandPlants) Phylogenetic Tree(s): OG_05_0004418_tree ,
OG_06_0003203 (SeedPlants) Phylogenetic Tree(s): OG_06_0003203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27816
Cluster HCCA: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00248730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
LOC_Os02g03530.1 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
MA_10435606g0010 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida
Zm00001e013539_P003 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 264 312
IPR002885 Pentatricopeptide_repeat 612 660
IPR002885 Pentatricopeptide_repeat 440 487
IPR002885 Pentatricopeptide_repeat 821 869
IPR002885 Pentatricopeptide_repeat 752 799
IPR002885 Pentatricopeptide_repeat 547 575
IPR002885 Pentatricopeptide_repeat 372 400
IPR002885 Pentatricopeptide_repeat 724 748
IPR002885 Pentatricopeptide_repeat 199 243
IPR002885 Pentatricopeptide_repeat 678 710
No external refs found!