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  5. Gb_27880

Gb_27880


Description : RNA editing factor (ECB2/VAC1)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009821 (LandPlants) Phylogenetic Tree(s): OG_05_0009821_tree ,
OG_06_0008042 (SeedPlants) Phylogenetic Tree(s): OG_06_0008042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27880
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00155170 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.03 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
AMTR_s00137p00065490 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_01226 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_09409 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_16828 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_18359 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_24928 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_27437 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_34248 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10430355g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_124907g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.07 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_16823g0010 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.05 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_445076g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
MA_64083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_84538g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Solyc01g081020.1.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e007538_P001 No alias RNA editing factor (MEF21) 0.02 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
Zm00001e019452_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.03 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e035654_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 754 878
IPR002885 Pentatricopeptide_repeat 581 627
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 278 324
IPR002885 Pentatricopeptide_repeat 481 527
IPR002885 Pentatricopeptide_repeat 379 427
IPR002885 Pentatricopeptide_repeat 555 577
IPR002885 Pentatricopeptide_repeat 656 679
No external refs found!