AT1G10910

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0008582 (Archaeplastida) Phylogenetic Tree(s): OG0008582_tree ,
OG_05_0007894 (LandPlants) Phylogenetic Tree(s): OG_05_0007894_tree ,
OG_06_0007781 (SeedPlants) Phylogenetic Tree(s): OG_06_0007781_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G10910
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00136p00085920	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g10910,...	0.04	Archaeplastida
GSVIVT01022920001	No alias	Pentatricopeptide repeat-containing protein At1g10910,...	0.03	Archaeplastida
LOC_Os01g37870.4	No alias	Pentatricopeptide repeat-containing protein At1g10910,...	0.03	Archaeplastida
Solyc11g040260.2.1	No alias	Pentatricopeptide repeat-containing protein At1g10910,...	0.04	Archaeplastida
Zm00001e020710_P002	No alias	Pentatricopeptide repeat-containing protein At1g10910,...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Neighborhood
BP	GO:0000304	response to singlet oxygen	IEP	Neighborhood
BP	GO:0000373	Group II intron splicing	IEP	Neighborhood
BP	GO:0002790	peptide secretion	IEP	Neighborhood
MF	GO:0003841	1-acylglycerol-3-phosphate O-acyltransferase activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0003984	acetolactate synthase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004532	exoribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Neighborhood
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Neighborhood
MF	GO:0004784	superoxide dismutase activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0007584	response to nutrient	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Neighborhood
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009306	protein secretion	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009526	plastid envelope	IEP	Neighborhood
CC	GO:0009527	plastid outer membrane	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0009668	plastid membrane organization	IEP	Neighborhood
CC	GO:0009707	chloroplast outer membrane	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
CC	GO:0009941	chloroplast envelope	IEP	Neighborhood
BP	GO:0010027	thylakoid membrane organization	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010239	chloroplast mRNA processing	IEP	Neighborhood
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015293	symporter activity	IEP	Neighborhood
MF	GO:0015294	solute:cation symporter activity	IEP	Neighborhood
MF	GO:0015295	solute:proton symporter activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Neighborhood
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0019430	removal of superoxide radicals	IEP	Neighborhood
CC	GO:0019866	organelle inner membrane	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0031425	chloroplast RNA processing	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031969	chloroplast membrane	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0034644	cellular response to UV	IEP	Neighborhood
BP	GO:0036473	cell death in response to oxidative stress	IEP	Neighborhood
CC	GO:0042170	plastid membrane	IEP	Neighborhood
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	Neighborhood
BP	GO:0042793	plastid transcription	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
BP	GO:0045036	protein targeting to chloroplast	IEP	Neighborhood
BP	GO:0048573	photoperiodism, flowering	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0071236	cellular response to antibiotic	IEP	Neighborhood
BP	GO:0071457	cellular response to ozone	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood
BP	GO:0071484	cellular response to light intensity	IEP	Neighborhood
BP	GO:0071486	cellular response to high light intensity	IEP	Neighborhood
BP	GO:0071493	cellular response to UV-B	IEP	Neighborhood
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	Neighborhood
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Neighborhood
BP	GO:0072598	protein localization to chloroplast	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Neighborhood
BP	GO:0098869	cellular oxidant detoxification	IEP	Neighborhood
BP	GO:1901259	chloroplast rRNA processing	IEP	Neighborhood
BP	GO:1990748	cellular detoxification	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	343	389
IPR002885	Pentatricopeptide_repeat	165	212
IPR002885	Pentatricopeptide_repeat	411	457
IPR002885	Pentatricopeptide_repeat	226	282
IPR002885	Pentatricopeptide_repeat	308	337

External Links

No external refs found!

AT1G10910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation