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  5. Gb_27926

Gb_27926


Description : Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana (sp|q9lfi1|pp280_arath : 640.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27926

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.03 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.06 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00069p00058270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.05 Archaeplastida
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.03 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.05 Archaeplastida
GSVIVT01007811001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.09 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
GSVIVT01010654001 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.08 Archaeplastida
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.06 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.1 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01017378001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.05 Archaeplastida
GSVIVT01018597001 No alias RNA processing.organelle machineries.RNA... 0.17 Archaeplastida
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Archaeplastida
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.04 Archaeplastida
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.08 Archaeplastida
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01033304001 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.07 Archaeplastida
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
GSVIVT01036010001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
GSVIVT01037332001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
GSVIVT01037562001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.08 Archaeplastida
Gb_03597 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_05942 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_10158 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_10985 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.1 Archaeplastida
Gb_12554 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_13369 No alias RNA editing factor (MEF12) 0.03 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_16828 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_17177 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_21965 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_24030 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_26723 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_27833 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_28612 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_29877 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_32456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_33111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_33136 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_39558 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_40472 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_41753 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_10429540g0020 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.5 Archaeplastida
MA_109134g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.25 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.14 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.06 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Solyc01g100790.1.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.1 Archaeplastida
Solyc01g100800.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc02g079380.2.1 No alias RNA editing factor (CRR22) 0.04 Archaeplastida
Solyc07g005850.3.1 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.05 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.17 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 88 148
IPR002885 Pentatricopeptide_repeat 442 468
IPR002885 Pentatricopeptide_repeat 570 616
IPR002885 Pentatricopeptide_repeat 166 213
IPR002885 Pentatricopeptide_repeat 267 314
IPR002885 Pentatricopeptide_repeat 470 515
IPR002885 Pentatricopeptide_repeat 368 415
No external refs found!