1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_27979

Gb_27979


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 561.0)


Gene families : OG0005512 (Archaeplastida) Phylogenetic Tree(s): OG0005512_tree ,
OG_05_0026733 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025157 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27979
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_175700g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.1 Archaeplastida
MA_8741g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.1 Archaeplastida
Smo104027 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.04 Archaeplastida
Smo10568 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.07 Archaeplastida
Smo109820 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
Smo125156 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Smo81428 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 222 247
IPR002885 Pentatricopeptide_repeat 358 382
IPR002885 Pentatricopeptide_repeat 250 276
IPR002885 Pentatricopeptide_repeat 146 194
IPR002885 Pentatricopeptide_repeat 283 330
IPR002885 Pentatricopeptide_repeat 384 431
IPR032867 DYW_dom 557 681
No external refs found!