Gb_28242

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 249.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_28242
Cluster	HCCA: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
Gb_00288	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_00434	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_08095	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_10322	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_13320	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_16799	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_25995	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_27534	No alias	no hits & (original description: none)	0.11	Archaeplastida
Gb_27945	No alias	no hits & (original description: none)	0.07	Archaeplastida
Gb_28600	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_30261	No alias	no hits & (original description: none)	0.01	Archaeplastida
Gb_30317	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_33414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_33583	No alias	no hits & (original description: none)	0.14	Archaeplastida
Gb_37606	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_38122	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_39764	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_40384	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_40853	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_41697	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	181	297
IPR025724	GAG-pre-integrase_dom	109	167

External Links

No external refs found!

Gb_28242

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation