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  5. Gb_28364

Gb_28364


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0022084 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0021481 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28364
Cluster HCCA: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00140120 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00179820 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00180640 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00180760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00181760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182440 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00182630 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00184790 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00021p00172130 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00023p00244390 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.04 Archaeplastida
AT2G29110 GLR2.8, ATGLR2.8 glutamate receptor 2.8 0.03 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.06 Archaeplastida
AT3G04110 ATGLR1.1, GLR1.1, GLR1 glutamate receptor 1.1 0.05 Archaeplastida
AT5G11180 ATGLR2.6, GLR2.6 glutamate receptor 2.6 0.02 Archaeplastida
AT5G27100 GLR2.1, ATGLR2.1 glutamate receptor 2.1 0.06 Archaeplastida
GSVIVT01014244001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
GSVIVT01030602001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033163001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
Gb_01725 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Gb_20613 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Gb_27767 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_39753 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
LOC_Os02g54640.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
LOC_Os09g26144.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_10429132g0010 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
MA_339780g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_46902g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_6222576g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_88153g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_9796468g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc02g082480.3.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Solyc05g045650.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g063180.3.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc06g063190.3.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc06g063200.2.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc06g063210.3.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc08g006500.4.1 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
Zm00001e009847_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Zm00001e013023_P001 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Zm00001e016082_P001 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 788 822
IPR001828 ANF_lig-bd_rcpt 56 397
IPR001638 Solute-binding_3/MltF_N 457 787
No external refs found!