1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_28365

Gb_28365


Description : iron superoxide dismutase. PAP4/FSD3 cofactor of plastid-encoded RNA polymerase


Gene families : OG0002591 (Archaeplastida) Phylogenetic Tree(s): OG0002591_tree ,
OG_05_0002051 (LandPlants) Phylogenetic Tree(s): OG_05_0002051_tree ,
OG_06_0002085 (SeedPlants) Phylogenetic Tree(s): OG_06_0002085_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28365
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00032580 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
AT5G23310 FSD3 Fe superoxide dismutase 3 0.11 Archaeplastida
AT5G51100 FSD2 Fe superoxide dismutase 2 0.1 Archaeplastida
Cre10.g436050 No alias Redox homeostasis.enzymatic reactive oxygen species... 0.02 Archaeplastida
GSVIVT01013850001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
GSVIVT01026137001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 Archaeplastida
Mp7g14090.1 No alias iron superoxide dismutase 0.02 Archaeplastida
Pp3c2_27440V3.1 No alias Fe superoxide dismutase 3 0.05 Archaeplastida
Solyc02g021140.3.1 No alias iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.09 Archaeplastida
Solyc03g095180.3.1 No alias iron superoxide dismutase. PAP9/FSD2 cofactor of... 0.07 Archaeplastida
Zm00001e036663_P001 No alias iron superoxide dismutase 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA Interproscan
BP GO:0006801 superoxide metabolic process IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019831 Mn/Fe_SOD_N 43 126
IPR019832 Mn/Fe_SOD_C 135 235
No external refs found!