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  5. Gb_28383

Gb_28383


Description : Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana (sp|q9fgr7|pp426_arath : 644.0)


Gene families : OG0007991 (Archaeplastida) Phylogenetic Tree(s): OG0007991_tree ,
OG_05_0007095 (LandPlants) Phylogenetic Tree(s): OG_05_0007095_tree ,
OG_06_0009597 (SeedPlants) Phylogenetic Tree(s): OG_06_0009597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28383
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00163880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50280,... 0.06 Archaeplastida
AT5G50280 EMB1006 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01007576001 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.03 Archaeplastida
LOC_Os05g22870.1 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.04 Archaeplastida
MA_135491g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9428230g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc03g111650.4.1 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.05 Archaeplastida
Zm00001e019902_P002 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 315
IPR002885 Pentatricopeptide_repeat 395 424
IPR002885 Pentatricopeptide_repeat 636 684
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 321 365
IPR002885 Pentatricopeptide_repeat 485 542
IPR002885 Pentatricopeptide_repeat 556 611
No external refs found!