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  5. Gb_28559

Gb_28559


Description : Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana (sp|q9fmf6|pp444_arath : 301.0)


Gene families : OG0009116 (Archaeplastida) Phylogenetic Tree(s): OG0009116_tree ,
OG_05_0008968 (LandPlants) Phylogenetic Tree(s): OG_05_0008968_tree ,
OG_06_0005695 (SeedPlants) Phylogenetic Tree(s): OG_06_0005695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28559
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT1G30290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
GSVIVT01021547001 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.07 Archaeplastida
LOC_Os12g42120.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
Solyc08g023490.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e017983_P001 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 332 377
IPR002885 Pentatricopeptide_repeat 434 483
IPR002885 Pentatricopeptide_repeat 575 622
IPR002885 Pentatricopeptide_repeat 640 672
IPR002885 Pentatricopeptide_repeat 504 532
IPR002885 Pentatricopeptide_repeat 395 427
IPR002885 Pentatricopeptide_repeat 228 256
IPR002885 Pentatricopeptide_repeat 545 572
IPR002885 Pentatricopeptide_repeat 681 704
IPR002885 Pentatricopeptide_repeat 193 221
No external refs found!