Gb_28622

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 142.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_28622
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
Gb_00288	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_00434	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_01729	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.11	Archaeplastida
Gb_02052	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_03442	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_06978	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_08105	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_08666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_09514	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.13	Archaeplastida
Gb_15074	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	Archaeplastida
Gb_15820	No alias	no hits & (original description: none)	0.13	Archaeplastida
Gb_16475	No alias	no hits & (original description: none)	0.07	Archaeplastida
Gb_17887	No alias	no hits & (original description: none)	0.07	Archaeplastida
Gb_18335	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.11	Archaeplastida
Gb_21518	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.17	Archaeplastida
Gb_21972	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_26666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_26759	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_26878	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_27233	No alias	no hits & (original description: none)	0.3	Archaeplastida
Gb_29546	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	Archaeplastida
Gb_29919	No alias	no hits & (original description: none)	0.2	Archaeplastida
Gb_30261	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_30317	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	Archaeplastida
Gb_36579	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_38048	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_39185	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_40384	No alias	no hits & (original description: none)	0.08	Archaeplastida
Gb_40566	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.12	Archaeplastida
Gb_40853	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.11	Archaeplastida
Gb_41335	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_41697	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Pp3c12_7790V3.1	No alias	Polynucleotidyl transferase, ribonuclease H-like...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	144	234
IPR025724	GAG-pre-integrase_dom	79	130

External Links

No external refs found!

Gb_28622

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation