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  5. Gb_28729

Gb_28729


Description : High mobility group B protein 9 OS=Arabidopsis thaliana (sp|q9sgs2|hmgb9_arath : 284.0)


Gene families : OG0000729 (Archaeplastida) Phylogenetic Tree(s): OG0000729_tree ,
OG_05_0001078 (LandPlants) Phylogenetic Tree(s): OG_05_0001078_tree ,
OG_06_0000935 (SeedPlants) Phylogenetic Tree(s): OG_06_0000935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28729
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
Gb_35021 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e024725_P002 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001606 ARID_dom 64 148
IPR009071 HMG_box_dom 295 362
No external refs found!