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  5. Gb_28754

Gb_28754


Description : SSU processome assembly factor (UTP18)


Gene families : OG0006019 (Archaeplastida) Phylogenetic Tree(s): OG0006019_tree ,
OG_05_0007184 (LandPlants) Phylogenetic Tree(s): OG_05_0007184_tree ,
OG_06_0007725 (SeedPlants) Phylogenetic Tree(s): OG_06_0007725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28754
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AT5G14050 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00020554.145 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.01 Archaeplastida
Cre06.g255950 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.01 Archaeplastida
GSVIVT01003806001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.03 Archaeplastida
Mp7g17180.1 No alias SSU processome assembly factor (UTP18) 0.04 Archaeplastida
Pp3c26_4890V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Solyc10g080180.3.1 No alias SSU processome assembly factor (UTP18) 0.04 Archaeplastida
Zm00001e013263_P001 No alias SSU processome assembly factor (UTP18) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 449 476
IPR001680 WD40_repeat 397 433
No external refs found!