1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_28758

Gb_28758


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 634.0)


Gene families : OG0010914 (Archaeplastida) Phylogenetic Tree(s): OG0010914_tree ,
OG_05_0008543 (LandPlants) Phylogenetic Tree(s): OG_05_0008543_tree ,
OG_06_0002335 (SeedPlants) Phylogenetic Tree(s): OG_06_0002335_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28758
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Gb_03481 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_07725 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_26313 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_481619g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 444
IPR002885 Pentatricopeptide_repeat 357 387
IPR002885 Pentatricopeptide_repeat 622 646
IPR002885 Pentatricopeptide_repeat 523 548
IPR002885 Pentatricopeptide_repeat 329 356
IPR002885 Pentatricopeptide_repeat 448 495
IPR002885 Pentatricopeptide_repeat 254 301
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 549 597
IPR032867 DYW_dom 721 845
No external refs found!