Gb_28802

Description : E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana (sp|q9snb6|rduf1_arath : 201.0)

Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0004757 (LandPlants) Phylogenetic Tree(s): OG_05_0004757_tree ,
OG_06_0002639 (SeedPlants) Phylogenetic Tree(s): OG_06_0002639_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_28802
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
AT3G60080	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G01980	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
Cpa\|evm.model.tig00000158.69	No alias	No description available	0.03	Archaeplastida
GSVIVT01022973001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01037379001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
LOC_Os01g74040.1	No alias	Probable E3 ubiquitin-protein ligase RHC2A...	0.02	Archaeplastida
LOC_Os02g52870.1	No alias	Probable E3 ubiquitin-protein ligase RHC1A...	0.02	Archaeplastida
LOC_Os08g36170.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os08g38060.1	No alias	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_7024054g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc06g005650.2.1	No alias	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e001202_P001	No alias	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e009715_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	Interproscan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	325	367
IPR010543	DUF1117	406	511

External Links

No external refs found!