1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_28909

Gb_28909


Description : endo-beta-1,4-mannanase


Gene families : OG0000315 (Archaeplastida) Phylogenetic Tree(s): OG0000315_tree ,
OG_05_0000179 (LandPlants) Phylogenetic Tree(s): OG_05_0000179_tree ,
OG_06_0001977 (SeedPlants) Phylogenetic Tree(s): OG_06_0001977_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28909
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00152240 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.heteromannan.modification and... 0.02 Archaeplastida
AMTR_s00011p00202020 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.heteromannan.modification and... 0.05 Archaeplastida
AMTR_s00077p00136900 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.heteromannan.modification and... 0.04 Archaeplastida
AMTR_s00099p00070100 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.heteromannan.modification and... 0.02 Archaeplastida
AT1G02310 MAN1 Glycosyl hydrolase superfamily protein 0.03 Archaeplastida
AT5G66460 AtMAN7, MAN7 Glycosyl hydrolase superfamily protein 0.05 Archaeplastida
GSVIVT01037212001 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.04 Archaeplastida
GSVIVT01037214001 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.07 Archaeplastida
LOC_Os01g47400.1 No alias endo-beta-1,4-mannanase 0.05 Archaeplastida
LOC_Os01g54300.1 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
LOC_Os05g25480.1 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
MA_10358593g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_10427065g0010 No alias endo-beta-1,4-mannanase 0.01 Archaeplastida
MA_10432193g0010 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
MA_10433157g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_10436185g0010 No alias Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis... 0.08 Archaeplastida
MA_110162g0010 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
MA_111906g0010 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
MA_38956g0010 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
MA_6558g0010 No alias endo-beta-1,4-mannanase 0.09 Archaeplastida
MA_71720g0010 No alias endo-beta-1,4-mannanase 0.07 Archaeplastida
MA_8194133g0010 No alias Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis... 0.08 Archaeplastida
MA_8330g0010 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
MA_894609g0010 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
Mp8g13360.1 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
Pp3c13_12000V3.1 No alias Glycosyl hydrolase superfamily protein 0.03 Archaeplastida
Pp3c2_29970V3.1 No alias Glycosyl hydrolase superfamily protein 0.02 Archaeplastida
Pp3c4_28130V3.1 No alias Glycosyl hydrolase superfamily protein 0.02 Archaeplastida
Pp3c5_23790V3.1 No alias Glycosyl hydrolase superfamily protein 0.05 Archaeplastida
Smo101148 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.03 Archaeplastida
Smo101525 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.04 Archaeplastida
Smo234867 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.03 Archaeplastida
Solyc02g084990.3.1 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
Solyc07g053920.3.1 No alias endo-beta-1,4-mannanase 0.07 Archaeplastida
Solyc10g008300.3.1 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
Solyc12g013770.3.1 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
Zm00001e019799_P001 No alias No annotation 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 67 368
No external refs found!