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  5. AT2G42350

AT2G42350


Description : RING/U-box superfamily protein


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000056 (SeedPlants) Phylogenetic Tree(s): OG_06_0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42350
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00061p00174460 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G72200 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G34000 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.04 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.04 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.04 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G43420 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01019530001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_00010 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_04642 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 Archaeplastida
Gb_07702 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Gb_26582 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_28932 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g14990.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g35440.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g36300.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g45390.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g46600.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.08 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os04g49160.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os05g29710.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g34560.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os07g48680.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g42390.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os11g02424.1 No alias RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os12g42540.1 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10433358g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_1252g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_15116g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_211g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_31462g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_754688g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_759689g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_77628g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_78643g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_786911g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_92848g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_22300V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo59303 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g105620.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g005490.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc04g074790.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc04g081890.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.05 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Solyc05g010170.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g055140.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc07g053420.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g011880.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc11g010330.3.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Solyc12g087860.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015477_P001 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e016092_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e022175_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e039357_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0002238 response to molecule of fungal origin IEP Neighborhood
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006984 ER-nucleus signaling pathway IEP Neighborhood
BP GO:0009404 toxin metabolic process IEP Neighborhood
BP GO:0009407 toxin catabolic process IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009712 catechol-containing compound metabolic process IEP Neighborhood
BP GO:0009713 catechol-containing compound biosynthetic process IEP Neighborhood
BP GO:0009801 cinnamic acid ester metabolic process IEP Neighborhood
BP GO:0009802 cinnamic acid ester biosynthetic process IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010200 response to chitin IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
BP GO:0010243 response to organonitrogen compound IEP Neighborhood
BP GO:0010345 suberin biosynthetic process IEP Neighborhood
BP GO:0010359 regulation of anion channel activity IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
MF GO:0010857 calcium-dependent protein kinase activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0018685 alkane 1-monooxygenase activity IEP Neighborhood
BP GO:0019748 secondary metabolic process IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
BP GO:0022898 regulation of transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0032409 regulation of transporter activity IEP Neighborhood
BP GO:0032412 regulation of ion transmembrane transporter activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0050832 defense response to fungus IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0090430 caffeoyl-CoA: alcohol caffeoyl transferase activity IEP Neighborhood
BP GO:0090431 alkyl caffeate ester biosynthetic process IEP Neighborhood
BP GO:0098754 detoxification IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902456 regulation of stomatal opening IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 99 142
No external refs found!