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  5. AT2G42480

AT2G42480


Description : TRAF-like family protein


Gene families : OG0002414 (Archaeplastida) Phylogenetic Tree(s): OG0002414_tree ,
OG_05_0001602 (LandPlants) Phylogenetic Tree(s): OG_05_0001602_tree ,
OG_06_0000866 (SeedPlants) Phylogenetic Tree(s): OG_06_0000866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42480
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G31370 No alias Ubiquitin-specific protease family C19-related protein 0.05 Archaeplastida
AT1G31380 No alias TRAF-like family protein 0.08 Archaeplastida
AT1G31390 No alias TRAF-like family protein 0.05 Archaeplastida
AT1G31400 No alias TRAF-like family protein 0.04 Archaeplastida
AT2G01790 No alias TRAF-like family protein 0.05 Archaeplastida
AT2G05420 No alias TRAF-like family protein 0.04 Archaeplastida
AT2G42460 No alias TRAF-like family protein 0.08 Archaeplastida
AT3G29580 No alias Arabidopsis phospholipase-like protein (PEARLI 4) with... 0.08 Archaeplastida
AT3G44790 No alias TRAF-like family protein 0.05 Archaeplastida
AT3G44805 No alias TRAF-like superfamily protein 0.04 Archaeplastida
AT3G58210 No alias TRAF-like family protein 0.04 Archaeplastida
AT3G58230 No alias Ubiquitin-specific protease family C19-related protein 0.03 Archaeplastida
AT3G58280 No alias Arabidopsis phospholipase-like protein (PEARLI 4) with... 0.05 Archaeplastida
AT3G58300 No alias Arabidopsis phospholipase-like protein (PEARLI 4) family 0.04 Archaeplastida
AT3G58330 No alias Arabidopsis phospholipase-like protein (PEARLI 4) family 0.04 Archaeplastida
AT3G58340 No alias TRAF-like family protein 0.16 Archaeplastida
AT3G58370 No alias TRAF-like family protein 0.12 Archaeplastida
AT3G58400 No alias TRAF-like family protein 0.02 Archaeplastida
AT3G58440 No alias TRAF-like superfamily protein 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004708 MAP kinase kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP Neighborhood
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP Neighborhood
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
MF GO:0015293 symporter activity IEP Neighborhood
MF GO:0015294 solute:cation symporter activity IEP Neighborhood
MF GO:0015295 solute:proton symporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 12 132
IPR002083 MATH/TRAF_dom 405 514
No external refs found!