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  5. Gb_29561

Gb_29561


Description : transcription factor (AP2)


Gene families : OG0000068 (Archaeplastida) Phylogenetic Tree(s): OG0000068_tree ,
OG_05_0000090 (LandPlants) Phylogenetic Tree(s): OG_05_0000090_tree ,
OG_06_0000054 (SeedPlants) Phylogenetic Tree(s): OG_06_0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29561
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00238000 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 Archaeplastida
AMTR_s00024p00227390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
AMTR_s00058p00216470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
AMTR_s00065p00077750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AT1G72570 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
AT3G54990 SMZ Integrase-type DNA-binding superfamily protein 0.04 Archaeplastida
AT5G67180 TOE3 target of early activation tagged (EAT) 3 0.02 Archaeplastida
Cre08.g385350 No alias No description available 0.01 Archaeplastida
GSVIVT01002536001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
LOC_Os01g59780.1 No alias transcription factor (AP2) 0.03 Archaeplastida
LOC_Os03g12950.1 No alias no description available(sp|q84z02|crl5_orysj : 102.0) 0.03 Archaeplastida
LOC_Os03g56050.1 No alias transcription factor (AP2) 0.02 Archaeplastida
LOC_Os06g43220.1 No alias transcription factor (AP2) 0.05 Archaeplastida
LOC_Os07g03250.1 No alias transcription factor (AP2) 0.04 Archaeplastida
LOC_Os07g13170.2 No alias transcription factor (AP2) 0.03 Archaeplastida
LOC_Os07g39110.2 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_30905g0010 No alias transcription factor (AP2) 0.05 Archaeplastida
Mp7g13270.1 No alias transcription factor (AP2) 0.04 Archaeplastida
Mp8g11450.1 No alias transcription factor (AP2) 0.02 Archaeplastida
Solyc02g092050.3.1 No alias transcription factor (AP2) 0.05 Archaeplastida
Solyc03g044300.3.1 No alias transcription factor (AP2) 0.03 Archaeplastida
Solyc03g123430.4.1 No alias transcription factor (AP2) 0.03 Archaeplastida
Solyc04g077490.3.1 No alias transcription factor (AP2) 0.04 Archaeplastida
Solyc11g010710.2.1 No alias transcription factor (AP2) 0.02 Archaeplastida
Zm00001e005817_P003 No alias transcription factor (AP2) 0.03 Archaeplastida
Zm00001e006752_P001 No alias transcription factor (AP2) 0.06 Archaeplastida
Zm00001e019489_P001 No alias transcription factor (AP2) 0.01 Archaeplastida
Zm00001e027593_P003 No alias transcription factor (AP2) 0.03 Archaeplastida
Zm00001e032754_P003 No alias transcription factor (AP2) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!