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  5. Gb_29853

Gb_29853


Description : transcription factor (AS2/LOB)


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29853

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00187850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AMTR_s00184p00044240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.06 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.03 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.06 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.02 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.03 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.04 Archaeplastida
GSVIVT01003546001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01004323001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01024662001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
Gb_19384 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_19720 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os01g14030.1 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
LOC_Os01g66590.2 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
LOC_Os05g07270.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_10434782g0020 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_161608g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_16646g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_290245g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_445236g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp4g10500.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp5g17820.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp7g14810.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp7g17250.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc03g095940.1.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc03g113360.4.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g082430.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc12g010810.1.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e019004_P002 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Zm00001e026736_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Zm00001e031510_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005384 manganese ion transmembrane transporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Neighborhood
BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030026 cellular manganese ion homeostasis IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046493 lipid A metabolic process IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055071 manganese ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 13 110
No external refs found!