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  5. Gb_29873

Gb_29873


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 726.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29873
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.04 Archaeplastida
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.03 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.04 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G66500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.02 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.02 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.03 Archaeplastida
Gb_04450 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_25029 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_27468 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_27879 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_40680 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_41801 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
LOC_Os04g57940.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.02 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_20746g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_265921g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_724726g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_77437g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Solyc01g099000.1.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.04 Archaeplastida
Solyc02g068630.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc09g009790.4.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.03 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc12g099620.1.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.04 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.02 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 300
IPR002885 Pentatricopeptide_repeat 454 502
IPR002885 Pentatricopeptide_repeat 556 603
IPR002885 Pentatricopeptide_repeat 353 401
IPR002885 Pentatricopeptide_repeat 152 198
IPR002885 Pentatricopeptide_repeat 227 252
IPR002885 Pentatricopeptide_repeat 530 553
IPR002885 Pentatricopeptide_repeat 631 654
IPR032867 DYW_dom 729 853
No external refs found!