AT2G42870 (PAR1, HLH1)

Aliases : PAR1, HLH1

Description : phy rapidly regulated 1

Gene families : OG0003513 (Archaeplastida) Phylogenetic Tree(s): OG0003513_tree ,
OG_05_0002430 (LandPlants) Phylogenetic Tree(s): OG_05_0002430_tree ,
OG_06_0001223 (SeedPlants) Phylogenetic Tree(s): OG_06_0001223_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42870
Cluster	HCCA: Cluster_249

Target	Alias	Description	ECC score	Gene Family Method
AT1G70270	No alias	unknown protein; BEST Arabidopsis thaliana protein match...	0.05	Archaeplastida
MA_36564g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_66021g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_96570g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc01g079270.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc06g009510.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009641	shade avoidance	IMP	Interproscan
BP	GO:0009641	shade avoidance	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045892	negative regulation of transcription, DNA-templated	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000322	storage vacuole	IEP	Neighborhood
CC	GO:0000326	protein storage vacuole	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
MF	GO:0004930	G-protein coupled receptor activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
MF	GO:0005275	amine transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
BP	GO:0006417	regulation of translation	IEP	Neighborhood
BP	GO:0006808	regulation of nitrogen utilization	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0007623	circadian rhythm	IEP	Neighborhood
MF	GO:0008020	G-protein coupled photoreceptor activity	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009746	response to hexose	IEP	Neighborhood
BP	GO:0009750	response to fructose	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
MF	GO:0009881	photoreceptor activity	IEP	Neighborhood
MF	GO:0009883	red or far-red light photoreceptor activity	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0009896	positive regulation of catabolic process	IEP	Neighborhood
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0010017	red or far-red light signaling pathway	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010114	response to red light	IEP	Neighborhood
BP	GO:0010161	red light signaling pathway	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
BP	GO:0010187	negative regulation of seed germination	IEP	Neighborhood
BP	GO:0010201	response to continuous far red light stimulus by the high-irradiance response system	IEP	Neighborhood
BP	GO:0010203	response to very low fluence red light stimulus	IEP	Neighborhood
BP	GO:0010218	response to far red light	IEP	Neighborhood
BP	GO:0010232	vascular transport	IEP	Neighborhood
BP	GO:0010233	phloem transport	IEP	Neighborhood
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015200	methylammonium transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015204	urea transmembrane transporter activity	IEP	Neighborhood
CC	GO:0015629	actin cytoskeleton	IEP	Neighborhood
BP	GO:0015840	urea transport	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016630	protochlorophyllide reductase activity	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
BP	GO:0017148	negative regulation of translation	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0019755	one-carbon compound transport	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
BP	GO:0031329	regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Neighborhood
MF	GO:0031516	far-red light photoreceptor activity	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0034284	response to monosaccharide	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
CC	GO:0042807	central vacuole	IEP	Neighborhood
BP	GO:0043901	negative regulation of multi-organism process	IEP	Neighborhood
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0045862	positive regulation of proteolysis	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048511	rhythmic process	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0055122	response to very low light intensity stimulus	IEP	Neighborhood
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071214	cellular response to abiotic stimulus	IEP	Neighborhood
BP	GO:0071478	cellular response to radiation	IEP	Neighborhood
BP	GO:0071482	cellular response to light stimulus	IEP	Neighborhood
BP	GO:0071483	cellular response to blue light	IEP	Neighborhood
BP	GO:0071489	cellular response to red or far red light	IEP	Neighborhood
BP	GO:0071491	cellular response to red light	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0104004	cellular response to environmental stimulus	IEP	Neighborhood
BP	GO:1900424	regulation of defense response to bacterium	IEP	Neighborhood
BP	GO:1900425	negative regulation of defense response to bacterium	IEP	Neighborhood
BP	GO:1901483	regulation of transcription factor catabolic process	IEP	Neighborhood
BP	GO:1901485	positive regulation of transcription factor catabolic process	IEP	Neighborhood
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:1903050	regulation of proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903052	positive regulation of proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903362	regulation of cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903364	positive regulation of cellular protein catabolic process	IEP	Neighborhood
BP	GO:2000033	regulation of seed dormancy process	IEP	Neighborhood
BP	GO:2000034	regulation of seed maturation	IEP	Neighborhood
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G42870 (PAR1, HLH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation