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  5. Gb_29932

Gb_29932


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 118.0)


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29932
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_00282 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_00777 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_02021 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_04615 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.07 Archaeplastida
Gb_04681 No alias Uncharacterized mitochondrial protein AtMg00820... 0.04 Archaeplastida
Gb_04745 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Gb_05496 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_05914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 Archaeplastida
Gb_06309 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Gb_06715 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_07443 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Gb_12163 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_13694 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_14369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_14957 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_15757 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_16624 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_17625 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_18990 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_20738 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.1 Archaeplastida
Gb_21706 No alias Uncharacterized mitochondrial protein AtMg00820... 0.07 Archaeplastida
Gb_22530 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_22939 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 Archaeplastida
Gb_23035 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.1 Archaeplastida
Gb_25800 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.15 Archaeplastida
Gb_25980 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_26797 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_28245 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_30477 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_30484 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_30851 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_31472 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 Archaeplastida
Gb_31929 No alias Uncharacterized mitochondrial protein AtMg00820... 0.06 Archaeplastida
Gb_33741 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_34818 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_36407 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_37459 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_37683 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_37914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 Archaeplastida
Gb_41823 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc06g150112.1.1 No alias No annotation 0.05 Archaeplastida
Solyc07g042235.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006571 tyrosine biosynthetic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 12 138
No external refs found!