1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_30049

Gb_30049


Description : transcription factor (TCP)


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree ,
OG_06_0058608 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30049
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00041830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.02 Archaeplastida
AMTR_s00154p00072430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
AT1G53230 TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.01 Archaeplastida
AT1G68800 TCP12, BRC2 TCP domain protein 12 0.02 Archaeplastida
AT3G18550 BRC1, ATTCP18, TCP18 TCP family transcription factor 0.03 Archaeplastida
GSVIVT01008234001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
LOC_Os03g49880.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os07g05720.1 No alias transcription factor (TCP) 0.02 Archaeplastida
LOC_Os09g24480.1 No alias transcription factor (TCP) 0.02 Archaeplastida
LOC_Os12g42190.1 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_101752g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_12784g0010 No alias transcription factor (TCP) 0.01 Archaeplastida
MA_16704g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_3891g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_75780g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_78665g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_86651g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo89227 No alias RNA biosynthesis.transcriptional activation.TCP... 0.05 Archaeplastida
Solyc02g077250.2.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc02g089020.2.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc02g089830.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc03g045030.2.1 No alias transcription factor (TCP) 0.01 Archaeplastida
Solyc03g115010.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc04g006980.1.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc06g069240.2.1 No alias transcription factor (TCP) 0.01 Archaeplastida
Solyc06g069460.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc07g053410.4.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc10g082063.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e005407_P001 No alias transcription factor (TCP) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 189 382
No external refs found!