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  5. Gb_30111

Gb_30111


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 81.6)


Gene families : OG0001961 (Archaeplastida) Phylogenetic Tree(s): OG0001961_tree ,
OG_05_0001392 (LandPlants) Phylogenetic Tree(s): OG_05_0001392_tree ,
OG_06_0002022 (SeedPlants) Phylogenetic Tree(s): OG_06_0002022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30111
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Gb_00459 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.16 Archaeplastida
Gb_03906 No alias no hits & (original description: none) 0.23 Archaeplastida
Gb_23778 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_35893 No alias no hits & (original description: none) 0.24 Archaeplastida
Gb_39569 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Pp3c4_14730V3.1 No alias No annotation 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 133 200
No external refs found!