Gb_30542

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 178.0)

Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_30542
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g183950	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_05895	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.07	Archaeplastida
Gb_08000	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	Archaeplastida
Gb_10172	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.13	Archaeplastida
Gb_10191	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.12	Archaeplastida
Gb_14369	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_16624	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_18989	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.12	Archaeplastida
Gb_22530	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	Archaeplastida
Gb_23035	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.06	Archaeplastida
Gb_23452	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.11	Archaeplastida
Gb_25800	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.06	Archaeplastida
Gb_29932	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_30477	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_30851	No alias	no hits & (original description: none)	0.07	Archaeplastida
Gb_31472	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_34088	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_38369	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	Archaeplastida
Pp3c15_880V3.1	No alias	DNA/RNA polymerases superfamily protein	0.02	Archaeplastida
Pp3c17_23320V3.1	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	0.02	Archaeplastida
Solyc06g150112.1.1	No alias	No annotation	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	2	57

External Links

No external refs found!

Gb_30542

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation