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  5. Gb_30544

Gb_30544


Description : Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana (sp|q8s8p6|pp180_arath : 410.0)


Gene families : OG0008885 (Archaeplastida) Phylogenetic Tree(s): OG0008885_tree ,
OG_05_0009763 (LandPlants) Phylogenetic Tree(s): OG_05_0009763_tree ,
OG_06_0005429 (SeedPlants) Phylogenetic Tree(s): OG_06_0005429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30544
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT5G38730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01018126001 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 478 510
IPR002885 Pentatricopeptide_repeat 517 565
IPR002885 Pentatricopeptide_repeat 342 391
IPR002885 Pentatricopeptide_repeat 272 321
IPR002885 Pentatricopeptide_repeat 412 460
IPR002885 Pentatricopeptide_repeat 587 635
IPR002885 Pentatricopeptide_repeat 242 270
IPR002885 Pentatricopeptide_repeat 175 199
No external refs found!