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  5. AT2G43810

AT2G43810


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0001499 (Archaeplastida) Phylogenetic Tree(s): OG0001499_tree ,
OG_05_0004530 (LandPlants) Phylogenetic Tree(s): OG_05_0004530_tree ,
OG_06_0006691 (SeedPlants) Phylogenetic Tree(s): OG_06_0006691_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43810
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.19 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 Archaeplastida
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.07 Archaeplastida
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
Gb_28751 No alias component LSm6 of U6-associated LSm accessory... 0.04 Archaeplastida
LOC_Os02g30624.2 No alias component LSm6 of U6-associated LSm accessory... 0.04 Archaeplastida
LOC_Os04g31950.1 No alias component LSm6 of U6-associated LSm accessory... 0.05 Archaeplastida
LOC_Os11g43620.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
MA_26016g0010 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Mp6g01610.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
Pp3c12_17630V3.1 No alias small nuclear ribonucleoprotein F 0.04 Archaeplastida
Smo228181 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 Archaeplastida
Smo268399 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Solyc10g078450.2.1 No alias component LSm6 of U6-associated LSm accessory... 0.05 Archaeplastida
Zm00001e025108_P001 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005732 small nucleolar ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0048766 root hair initiation IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 17 81
No external refs found!