1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_30942

Gb_30942


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 536.0)


Gene families : OG0013345 (Archaeplastida) Phylogenetic Tree(s): OG0013345_tree ,
OG_05_0015875 (LandPlants) Phylogenetic Tree(s): OG_05_0015875_tree ,
OG_06_0014228 (SeedPlants) Phylogenetic Tree(s): OG_06_0014228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30942
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Gb_16986 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.06 Archaeplastida
Gb_32451 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 Archaeplastida
MA_465411g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 156
IPR002885 Pentatricopeptide_repeat 520 551
IPR002885 Pentatricopeptide_repeat 262 290
IPR002885 Pentatricopeptide_repeat 366 391
IPR002885 Pentatricopeptide_repeat 234 257
IPR002885 Pentatricopeptide_repeat 394 420
IPR002885 Pentatricopeptide_repeat 630 655
IPR002885 Pentatricopeptide_repeat 730 754
IPR002885 Pentatricopeptide_repeat 555 603
IPR002885 Pentatricopeptide_repeat 159 205
IPR002885 Pentatricopeptide_repeat 291 338
IPR002885 Pentatricopeptide_repeat 423 470
IPR002885 Pentatricopeptide_repeat 656 704
No external refs found!