1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G44200

AT2G44200


Description : CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor


Gene families : OG0004343 (Archaeplastida) Phylogenetic Tree(s): OG0004343_tree ,
OG_05_0003959 (LandPlants) Phylogenetic Tree(s): OG_05_0003959_tree ,
OG_06_0007728 (SeedPlants) Phylogenetic Tree(s): OG_06_0007728_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G44200
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g39090.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp6g00340.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Smo411594 No alias No description available 0.02 Archaeplastida
Zm00001e003453_P002 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
CC GO:0005652 nuclear lamina IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005798 Golgi-associated vesicle IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006896 Golgi to vacuole transport IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030133 transport vesicle IEP Neighborhood
CC GO:0030135 coated vesicle IEP Neighborhood
CC GO:0030136 clathrin-coated vesicle IEP Neighborhood
CC GO:0030140 trans-Golgi network transport vesicle IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0034399 nuclear periphery IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0045324 late endosome to vacuole transport IEP Neighborhood
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022209 CWC25 64 156
IPR019339 CIR_N_dom 11 46
No external refs found!