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  5. Gb_31530

Gb_31530


Description : Pentatricopeptide repeat-containing protein At5g15280, mitochondrial OS=Arabidopsis thaliana (sp|q9lxf4|pp384_arath : 530.0)


Gene families : OG0010476 (Archaeplastida) Phylogenetic Tree(s): OG0010476_tree ,
OG_05_0010467 (LandPlants) Phylogenetic Tree(s): OG_05_0010467_tree ,
OG_06_0009400 (SeedPlants) Phylogenetic Tree(s): OG_06_0009400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31530
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT5G15280 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01011442001 No alias Pentatricopeptide repeat-containing protein At5g15280,... 0.04 Archaeplastida
LOC_Os03g07220.1 No alias Pentatricopeptide repeat-containing protein At5g15280,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 964 993
IPR002885 Pentatricopeptide_repeat 511 539
IPR002885 Pentatricopeptide_repeat 650 677
IPR002885 Pentatricopeptide_repeat 477 504
IPR002885 Pentatricopeptide_repeat 150 208
IPR002885 Pentatricopeptide_repeat 584 625
IPR002885 Pentatricopeptide_repeat 371 420
IPR002885 Pentatricopeptide_repeat 1068 1115
IPR002885 Pentatricopeptide_repeat 786 835
IPR002885 Pentatricopeptide_repeat 996 1044
IPR002885 Pentatricopeptide_repeat 301 350
IPR002885 Pentatricopeptide_repeat 232 280
IPR002885 Pentatricopeptide_repeat 1136 1184
IPR002885 Pentatricopeptide_repeat 891 940
IPR002885 Pentatricopeptide_repeat 860 884
IPR002885 Pentatricopeptide_repeat 717 742
No external refs found!