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  5. Gb_31799

Gb_31799


Description : Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana (sp|p0c8r0|pp416_arath : 308.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0009591 (SeedPlants) Phylogenetic Tree(s): OG_06_0009591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31799

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00029790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80880,... 0.03 Archaeplastida
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 Archaeplastida
AT1G80880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.11 Archaeplastida
LOC_Os04g55090.1 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
LOC_Os05g28720.1 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.01 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.06 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 133 180
IPR002885 Pentatricopeptide_repeat 63 111
IPR002885 Pentatricopeptide_repeat 209 248
IPR002885 Pentatricopeptide_repeat 33 60
IPR002885 Pentatricopeptide_repeat 277 306
No external refs found!