AT2G44880


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0011023 (Archaeplastida) Phylogenetic Tree(s): OG0011023_tree ,
OG_05_0009848 (LandPlants) Phylogenetic Tree(s): OG_05_0009848_tree ,
OG_06_0012961 (SeedPlants) Phylogenetic Tree(s): OG_06_0012961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G44880
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.07 Archaeplastida
Gb_21434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
LOC_Os03g17510.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.06 Archaeplastida
Solyc01g090390.1.1 No alias RNA editing factor (AHG11) 0.1 Archaeplastida
Solyc09g007050.1.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.11 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0031590 wybutosine metabolic process IEP Neighborhood
BP GO:0031591 wybutosine biosynthetic process IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 205
IPR002885 Pentatricopeptide_repeat 237 280
IPR002885 Pentatricopeptide_repeat 376 405
IPR002885 Pentatricopeptide_repeat 342 366
IPR002885 Pentatricopeptide_repeat 145 170
IPR002885 Pentatricopeptide_repeat 312 339
IPR002885 Pentatricopeptide_repeat 411 435
IPR002885 Pentatricopeptide_repeat 206 233
No external refs found!