Aliases : RDO4, HUB1
Description : histone mono-ubiquitination 1
Gene families : OG0001773 (Archaeplastida) Phylogenetic Tree(s): OG0001773_tree ,
OG_05_0002127 (LandPlants) Phylogenetic Tree(s): OG_05_0002127_tree ,
OG_06_0002842 (SeedPlants) Phylogenetic Tree(s): OG_06_0002842_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G44950 | |
Cluster | HCCA: Cluster_192 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01018223001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.05 | Archaeplastida | |
Gb_15023 | No alias | RING-HC-class E3 ligase | 0.02 | Archaeplastida | |
MA_10425980g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Mp6g03540.1 | No alias | RING-HC-class E3 ligase | 0.04 | Archaeplastida | |
Pp3c12_18130V3.1 | No alias | histone mono-ubiquitination 2 | 0.02 | Archaeplastida | |
Pp3c16_2030V3.1 | No alias | histone mono-ubiquitination 1 | 0.03 | Archaeplastida | |
Smo175555 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | Archaeplastida | |
Zm00001e013143_P005 | No alias | RING-HC-class E3 ligase | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000278 | mitotic cell cycle | RCA | Interproscan |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | RCA | Interproscan |
BP | GO:0003002 | regionalization | RCA | Interproscan |
MF | GO:0004842 | ubiquitin-protein transferase activity | IDA | Interproscan |
MF | GO:0005515 | protein binding | IPI | Interproscan |
CC | GO:0005634 | nucleus | IDA | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005739 | mitochondrion | IDA | Interproscan |
BP | GO:0006396 | RNA processing | RCA | Interproscan |
BP | GO:0006406 | mRNA export from nucleus | RCA | Interproscan |
BP | GO:0006513 | protein monoubiquitination | IDA | Interproscan |
BP | GO:0007062 | sister chromatid cohesion | RCA | Interproscan |
BP | GO:0007155 | cell adhesion | RCA | Interproscan |
BP | GO:0007346 | regulation of mitotic cell cycle | RCA | Interproscan |
MF | GO:0008270 | zinc ion binding | ISS | Interproscan |
BP | GO:0009640 | photomorphogenesis | RCA | Interproscan |
BP | GO:0009793 | embryo development ending in seed dormancy | RCA | Interproscan |
BP | GO:0009817 | defense response to fungus, incompatible interaction | IMP | Interproscan |
BP | GO:0009845 | seed germination | RCA | Interproscan |
BP | GO:0009880 | embryonic pattern specification | RCA | Interproscan |
BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
BP | GO:0009933 | meristem structural organization | RCA | Interproscan |
BP | GO:0009965 | leaf morphogenesis | IMP | Interproscan |
BP | GO:0010014 | meristem initiation | RCA | Interproscan |
BP | GO:0010072 | primary shoot apical meristem specification | RCA | Interproscan |
BP | GO:0010074 | maintenance of meristem identity | RCA | Interproscan |
BP | GO:0010090 | trichome morphogenesis | RCA | Interproscan |
BP | GO:0010162 | seed dormancy process | IMP | Interproscan |
BP | GO:0010162 | seed dormancy process | RCA | Interproscan |
BP | GO:0010182 | sugar mediated signaling pathway | RCA | Interproscan |
BP | GO:0010228 | vegetative to reproductive phase transition of meristem | IMP | Interproscan |
BP | GO:0010228 | vegetative to reproductive phase transition of meristem | RCA | Interproscan |
BP | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | IMP | Interproscan |
BP | GO:0010390 | histone monoubiquitination | IMP | Interproscan |
BP | GO:0010413 | glucuronoxylan metabolic process | RCA | Interproscan |
BP | GO:0010431 | seed maturation | RCA | Interproscan |
BP | GO:0010564 | regulation of cell cycle process | RCA | Interproscan |
BP | GO:0016049 | cell growth | IMP | Interproscan |
BP | GO:0016049 | cell growth | RCA | Interproscan |
BP | GO:0016567 | protein ubiquitination | RCA | Interproscan |
BP | GO:0016571 | histone methylation | RCA | Interproscan |
BP | GO:0016579 | protein deubiquitination | RCA | Interproscan |
BP | GO:0016926 | protein desumoylation | RCA | Interproscan |
BP | GO:0019915 | lipid storage | RCA | Interproscan |
BP | GO:0033043 | regulation of organelle organization | RCA | Interproscan |
BP | GO:0033523 | histone H2B ubiquitination | IMP | Interproscan |
MF | GO:0042803 | protein homodimerization activity | IPI | Interproscan |
BP | GO:0045010 | actin nucleation | RCA | Interproscan |
BP | GO:0045492 | xylan biosynthetic process | RCA | Interproscan |
BP | GO:0045595 | regulation of cell differentiation | RCA | Interproscan |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | RCA | Interproscan |
BP | GO:0048366 | leaf development | RCA | Interproscan |
BP | GO:0048449 | floral organ formation | RCA | Interproscan |
BP | GO:0048589 | developmental growth | RCA | Interproscan |
BP | GO:0048825 | cotyledon development | RCA | Interproscan |
BP | GO:0050665 | hydrogen peroxide biosynthetic process | RCA | Interproscan |
BP | GO:0050826 | response to freezing | RCA | Interproscan |
BP | GO:0051301 | cell division | IMP | Interproscan |
BP | GO:0051301 | cell division | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001664 | G-protein coupled receptor binding | IEP | Neighborhood |
MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
MF | GO:0004156 | dihydropteroate synthase activity | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
BP | GO:0006342 | chromatin silencing | IEP | Neighborhood |
BP | GO:0006346 | methylation-dependent chromatin silencing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006486 | protein glycosylation | IEP | Neighborhood |
BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0007186 | G-protein coupled receptor signaling pathway | IEP | Neighborhood |
BP | GO:0007187 | G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | IEP | Neighborhood |
BP | GO:0007188 | adenylate cyclase-modulating G-protein coupled receptor signaling pathway | IEP | Neighborhood |
MF | GO:0008131 | primary amine oxidase activity | IEP | Neighborhood |
MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Neighborhood |
BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0009606 | tropism | IEP | Neighborhood |
BP | GO:0009629 | response to gravity | IEP | Neighborhood |
BP | GO:0009630 | gravitropism | IEP | Neighborhood |
BP | GO:0009785 | blue light signaling pathway | IEP | Neighborhood |
BP | GO:0009838 | abscission | IEP | Neighborhood |
BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0009937 | regulation of gibberellic acid mediated signaling pathway | IEP | Neighborhood |
BP | GO:0009938 | negative regulation of gibberellic acid mediated signaling pathway | IEP | Neighborhood |
BP | GO:0009954 | proximal/distal pattern formation | IEP | Neighborhood |
BP | GO:0010091 | trichome branching | IEP | Neighborhood |
BP | GO:0010093 | specification of floral organ identity | IEP | Neighborhood |
BP | GO:0010099 | regulation of photomorphogenesis | IEP | Neighborhood |
BP | GO:0010100 | negative regulation of photomorphogenesis | IEP | Neighborhood |
BP | GO:0010227 | floral organ abscission | IEP | Neighborhood |
BP | GO:0010229 | inflorescence development | IEP | Neighborhood |
BP | GO:0010452 | histone H3-K36 methylation | IEP | Neighborhood |
BP | GO:0010555 | response to mannitol | IEP | Neighborhood |
BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
BP | GO:0016246 | RNA interference | IEP | Neighborhood |
MF | GO:0016262 | protein N-acetylglucosaminyltransferase activity | IEP | Neighborhood |
BP | GO:0016441 | posttranscriptional gene silencing | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Neighborhood |
MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Neighborhood |
BP | GO:0019321 | pentose metabolic process | IEP | Neighborhood |
CC | GO:0019897 | extrinsic component of plasma membrane | IEP | Neighborhood |
CC | GO:0019898 | extrinsic component of membrane | IEP | Neighborhood |
BP | GO:0030522 | intracellular receptor signaling pathway | IEP | Neighborhood |
BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
CC | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane | IEP | Neighborhood |
BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Neighborhood |
MF | GO:0031683 | G-protein beta/gamma-subunit complex binding | IEP | Neighborhood |
BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0033044 | regulation of chromosome organization | IEP | Neighborhood |
BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0034508 | centromere complex assembly | IEP | Neighborhood |
BP | GO:0035194 | posttranscriptional gene silencing by RNA | IEP | Neighborhood |
BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0042732 | D-xylose metabolic process | IEP | Neighborhood |
BP | GO:0043413 | macromolecule glycosylation | IEP | Neighborhood |
BP | GO:0043687 | post-translational protein modification | IEP | Neighborhood |
MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
BP | GO:0045727 | positive regulation of translation | IEP | Neighborhood |
BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0045892 | negative regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0048316 | seed development | IEP | Neighborhood |
BP | GO:0048367 | shoot system development | IEP | Neighborhood |
BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
BP | GO:0048598 | embryonic morphogenesis | IEP | Neighborhood |
BP | GO:0048608 | reproductive structure development | IEP | Neighborhood |
BP | GO:0048731 | system development | IEP | Neighborhood |
BP | GO:0048826 | cotyledon morphogenesis | IEP | Neighborhood |
BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051177 | meiotic sister chromatid cohesion | IEP | Neighborhood |
BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Neighborhood |
BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0051568 | histone H3-K4 methylation | IEP | Neighborhood |
BP | GO:0051781 | positive regulation of cell division | IEP | Neighborhood |
BP | GO:0055070 | copper ion homeostasis | IEP | Neighborhood |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
BP | GO:0070085 | glycosylation | IEP | Neighborhood |
BP | GO:0071483 | cellular response to blue light | IEP | Neighborhood |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
BP | GO:0090567 | reproductive shoot system development | IEP | Neighborhood |
BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | Neighborhood |
BP | GO:0090701 | specification of plant organ identity | IEP | Neighborhood |
BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Neighborhood |
BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:1905421 | regulation of plant organ morphogenesis | IEP | Neighborhood |
BP | GO:2000030 | regulation of response to red or far red light | IEP | Neighborhood |
BP | GO:2000067 | regulation of root morphogenesis | IEP | Neighborhood |
BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2000280 | regulation of root development | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |