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Gb_32774


Description : CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana (sp|q9lda9|caf2p_arath : 190.0)


Gene families : OG0001098 (Archaeplastida) Phylogenetic Tree(s): OG0001098_tree ,
OG_05_0028941 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027345 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_32774
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.07 Archaeplastida
GSVIVT01013770001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01015331001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
LOC_Os01g21990.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.05 Archaeplastida
LOC_Os08g07790.1 No alias mCSF mitochondrial RNA splicing factor 0.02 Archaeplastida
MA_54539g0010 No alias CRS2-associated factor 2, mitochondrial OS=Arabidopsis... 0.02 Archaeplastida
MA_5636874g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_757065g0010 No alias CRS2-associated factor 2, chloroplastic OS=Oryza sativa... 0.02 Archaeplastida
Pp3c23_16010V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.04 Archaeplastida
Solyc05g018240.4.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 Archaeplastida
Solyc11g066300.3.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.05 Archaeplastida
Zm00001e017545_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 21 104
No external refs found!