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  5. Gb_33061

Gb_33061


Description : RNA editing factor (MEF3)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33061

Target Alias Description ECC score Gene Family Method Actions
Gb_00601 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Gb_04450 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_06568 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_08029 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_08053 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_08619 No alias RNA editing factor (MEF19) 0.08 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_13227 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_13599 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.14 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_20456 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.08 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_22769 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.09 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_27833 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_27879 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_31706 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.2 Archaeplastida
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_41804 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.1 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.1 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.06 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.1 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.01 Archaeplastida
Smo101 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo101316 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Smo101455 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Smo105033 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.01 Archaeplastida
Smo106096 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Smo110980 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo117846 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.02 Archaeplastida
Smo118039 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Smo118817 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.06 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.05 Archaeplastida
Smo123450 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo124564 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
Smo125997 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Smo126928 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo127010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
Smo133094 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo133320 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Smo133872 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Smo134581 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo136851 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
Smo151406 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo20633 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo27025 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
Smo410093 No alias No description available 0.05 Archaeplastida
Smo42377 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo55271 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.14 Archaeplastida
Smo72231 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
Smo73641 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Smo74749 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Smo76916 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Smo79457 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo80739 No alias Putative pentatricopeptide repeat-containing protein... 0.2 Archaeplastida
Smo84768 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
Smo90996 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
Smo92471 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo92565 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 100 147
IPR002885 Pentatricopeptide_repeat 503 551
IPR002885 Pentatricopeptide_repeat 302 349
IPR002885 Pentatricopeptide_repeat 403 450
IPR002885 Pentatricopeptide_repeat 201 247
IPR032867 DYW_dom 677 801
IPR002885 Pentatricopeptide_repeat 579 604
IPR002885 Pentatricopeptide_repeat 175 200
IPR002885 Pentatricopeptide_repeat 275 297
No external refs found!