1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_33182

Gb_33182


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 180.0)


Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0008074 (SeedPlants) Phylogenetic Tree(s): OG_06_0008074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33182
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Gb_00288 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_03442 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.2 Archaeplastida
Gb_10464 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_18335 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.06 Archaeplastida
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_23548 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_26975 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_27233 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 Archaeplastida
Gb_29919 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_37606 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_37666 No alias no hits & (original description: none) 0.17 Archaeplastida
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_40384 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 108 200
IPR025724 GAG-pre-integrase_dom 27 79
No external refs found!