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  5. Gb_33311

Gb_33311


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 502.0)


Gene families : OG0006958 (Archaeplastida) Phylogenetic Tree(s): OG0006958_tree ,
OG_05_0008357 (LandPlants) Phylogenetic Tree(s): OG_05_0008357_tree ,
OG_06_0053141 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33311
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Gb_23085 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
MA_13022g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.1 Archaeplastida
MA_35889g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.1 Archaeplastida
MA_450924g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo114085 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 285 313
IPR002885 Pentatricopeptide_repeat 520 544
IPR002885 Pentatricopeptide_repeat 316 343
IPR002885 Pentatricopeptide_repeat 254 284
IPR002885 Pentatricopeptide_repeat 228 252
IPR002885 Pentatricopeptide_repeat 587 614
IPR002885 Pentatricopeptide_repeat 411 443
IPR002885 Pentatricopeptide_repeat 344 392
IPR002885 Pentatricopeptide_repeat 61 97
IPR002885 Pentatricopeptide_repeat 446 494
IPR002885 Pentatricopeptide_repeat 150 198
No external refs found!