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  5. Gb_33342

Gb_33342


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 139.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000372 (LandPlants) Phylogenetic Tree(s): OG_05_0000372_tree ,
OG_06_0000167 (SeedPlants) Phylogenetic Tree(s): OG_06_0000167_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33342
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_09554 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
Gb_09686 No alias Uncharacterized mitochondrial protein AtMg00860... 0.07 Archaeplastida
Gb_12173 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_23067 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_28570 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_30072 No alias Uncharacterized mitochondrial protein AtMg00860... 0.03 Archaeplastida
Gb_30122 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_30972 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_32815 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_33463 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_36033 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_36546 No alias Uncharacterized mitochondrial protein AtMg00860... 0.05 Archaeplastida
Gb_36965 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_38589 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
Gb_38708 No alias Uncharacterized mitochondrial protein AtMg00860... 0.03 Archaeplastida
Gb_39593 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_40215 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
Solyc06g033787.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 934 1094
IPR005162 Retrotrans_gag_dom 498 587
No external refs found!