Gb_33357


Description : Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana (sp|q9s733|pp196_arath : 167.0)


Gene families : OG0001265 (Archaeplastida) Phylogenetic Tree(s): OG0001265_tree ,
OG_05_0000728 (LandPlants) Phylogenetic Tree(s): OG_05_0000728_tree ,
OG_06_0001775 (SeedPlants) Phylogenetic Tree(s): OG_06_0001775_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33357
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.06 Archaeplastida
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.05 Archaeplastida
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.03 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
MA_69152g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 Archaeplastida
MA_863891g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g04070.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 Archaeplastida
Mp2g13600.1 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.02 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 428 453
IPR002885 Pentatricopeptide_repeat 250 278
IPR002885 Pentatricopeptide_repeat 390 409
IPR002885 Pentatricopeptide_repeat 291 313
IPR002885 Pentatricopeptide_repeat 315 365
No external refs found!