Gb_33537

Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 574.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0027332 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025508 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_33537

Target	Alias	Description	ECC score	Gene Family Method
AT1G18485	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G02010	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.1	Archaeplastida
AT3G03580	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G13880	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
AT3G21470	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.03	Archaeplastida
AT4G18840	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.06	Archaeplastida
GSVIVT01003804001	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.05	Archaeplastida
GSVIVT01011333001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.02	Archaeplastida
GSVIVT01029382001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01036975001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.06	Archaeplastida
GSVIVT01037258001	No alias	Pentatricopeptide repeat-containing protein At5g27110...	0.04	Archaeplastida
Gb_02911	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
Gb_03263	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.11	Archaeplastida
Gb_03579	No alias	RNA editing factor (MEF12)	0.08	Archaeplastida
Gb_03691	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.07	Archaeplastida
Gb_04079	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
Gb_04080	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_07217	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
Gb_08036	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.06	Archaeplastida
Gb_09793	No alias	RNA editing factor (MEF7)	0.05	Archaeplastida
Gb_09797	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_11222	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Gb_11664	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_11667	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.06	Archaeplastida
Gb_12554	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_17095	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Gb_17177	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_17962	No alias	RNA editing factor (SEL1/PDM1)	0.05	Archaeplastida
Gb_18149	No alias	OTP70 plastidial RNA splicing factor	0.04	Archaeplastida
Gb_18166	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
Gb_18986	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.07	Archaeplastida
Gb_19924	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
Gb_20488	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_21049	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_21442	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.07	Archaeplastida
Gb_23267	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.06	Archaeplastida
Gb_23967	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
Gb_26260	No alias	RNA editing factor (MEF7)	0.06	Archaeplastida
Gb_26581	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Gb_28390	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
Gb_29768	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.05	Archaeplastida
Gb_31498	No alias	RNA editing factor (MEF19)	0.11	Archaeplastida
Gb_32453	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.11	Archaeplastida
Gb_33064	No alias	RNA editing factor (OTP82)	0.05	Archaeplastida
Gb_33328	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Gb_33726	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
Gb_35599	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.07	Archaeplastida
Gb_37254	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.1	Archaeplastida
Gb_37802	No alias	Pentatricopeptide repeat-containing protein At2g33680...	0.08	Archaeplastida
Gb_38441	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.07	Archaeplastida
Gb_39440	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.04	Archaeplastida
Gb_41234	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
LOC_Os06g40860.1	No alias	Pentatricopeptide repeat-containing protein At1g03540...	0.03	Archaeplastida
LOC_Os07g07620.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.02	Archaeplastida
LOC_Os07g20420.1	No alias	Pentatricopeptide repeat-containing protein At3g26782,...	0.03	Archaeplastida
LOC_Os11g10740.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.09	Archaeplastida
MA_101084g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_103698g0030	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_10426261g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_10429069g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_10429371g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_10430355g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.07	Archaeplastida
MA_10432670g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_10432670g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.11	Archaeplastida
MA_110g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_112066g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
MA_11454g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.02	Archaeplastida
MA_114565g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_116829g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_124868g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_140591g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
MA_141731g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.02	Archaeplastida
MA_16917g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_19715g0020	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.06	Archaeplastida
MA_230261g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_24849g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_27726g0010	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
MA_285318g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_2991g0010	No alias	RNA editing factor (MEF12)	0.02	Archaeplastida
MA_30949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_322292g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.08	Archaeplastida
MA_3502g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
MA_36643g0010	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
MA_392600g0010	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.14	Archaeplastida
MA_41676g0020	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.05	Archaeplastida
MA_46875g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
MA_470025g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.12	Archaeplastida
MA_472579g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.05	Archaeplastida
MA_483636g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
MA_49545g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.09	Archaeplastida
MA_49629g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.08	Archaeplastida
MA_50789g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
MA_519985g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
MA_52613g0020	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.07	Archaeplastida
MA_60579g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.09	Archaeplastida
MA_61422g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_65500g0010	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.08	Archaeplastida
MA_70677g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_724726g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_73895g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.08	Archaeplastida
MA_75133g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.07	Archaeplastida
MA_794605g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_81105g0010	No alias	RNA editing factor (OTP82)	0.08	Archaeplastida
MA_81514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_8210920g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.06	Archaeplastida
MA_8319g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.1	Archaeplastida
MA_86739g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_8678g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_8893194g0010	No alias	RNA editing factor (MEF1)	0.1	Archaeplastida
MA_9415113g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_953793g0020	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_95507g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_961981g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_98224g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Smo116755	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Solyc03g119950.1.1	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
Zm00001e005246_P001	No alias	Pentatricopeptide repeat-containing protein At2g41080...	0.06	Archaeplastida
Zm00001e007042_P001	No alias	RNA editing factor (AEF1)	0.03	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
Zm00001e013713_P001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.02	Archaeplastida
Zm00001e020567_P001	No alias	RNA editing factor (MEF7)	0.02	Archaeplastida
Zm00001e022858_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
Zm00001e030553_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Zm00001e035419_P001	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	358	379
IPR002885	Pentatricopeptide_repeat	87	116
IPR002885	Pentatricopeptide_repeat	459	482
IPR002885	Pentatricopeptide_repeat	254	282
IPR002885	Pentatricopeptide_repeat	226	251
IPR002885	Pentatricopeptide_repeat	384	431
IPR002885	Pentatricopeptide_repeat	151	198
IPR002885	Pentatricopeptide_repeat	283	330
IPR032867	DYW_dom	557	681

External Links

No external refs found!

Gb_33537

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation