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Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana (sp|q9m3a8|pp273_arath : 272.0)
Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_33759 | |
| Cluster | HCCA: Cluster_144 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00236970 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | Archaeplastida | |
| GSVIVT01023159001 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
| LOC_Os05g30240.1 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.07 | Archaeplastida | |
| LOC_Os11g24570.1 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | Archaeplastida | |
| MA_118904g0010 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
| Solyc03g083280.4.1 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | Archaeplastida | |
| Zm00001e004732_P001 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.05 | Archaeplastida | |
| Zm00001e020614_P001 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.12 | Archaeplastida | |
| Zm00001e032163_P001 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.1 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| CC | GO:0005759 | mitochondrial matrix | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | Neighborhood |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043233 | organelle lumen | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 371 | 420 |
| IPR002885 | Pentatricopeptide_repeat | 441 | 489 |
| IPR002885 | Pentatricopeptide_repeat | 267 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 161 | 208 |
| IPR002885 | Pentatricopeptide_repeat | 129 | 158 |
| IPR002885 | Pentatricopeptide_repeat | 235 | 263 |
| IPR002885 | Pentatricopeptide_repeat | 332 | 364 |
| No external refs found! |