AT2G46830 (CCA1)


Aliases : CCA1

Description : circadian clock associated 1


Gene families : OG0010951 (Archaeplastida) Phylogenetic Tree(s): OG0010951_tree ,
OG_05_0010146 (LandPlants) Phylogenetic Tree(s): OG_05_0010146_tree ,
OG_06_0010117 (SeedPlants) Phylogenetic Tree(s): OG_06_0010117_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G46830
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.core oscillator... 0.1 Archaeplastida
LOC_Os08g06110.3 No alias transcription factor (MYB-related). circadian clock core... 0.04 Archaeplastida
Solyc10g005080.3.1 No alias transcription factor (MYB-related). circadian clock core... 0.12 Archaeplastida
Zm00001e021724_P005 No alias transcription factor (MYB-related). circadian clock core... 0.06 Archaeplastida
Zm00001e040216_P002 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e040217_P001 No alias circadian clock core oscillator protein (LHY|CCA1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0007623 circadian rhythm IMP Interproscan
BP GO:0007623 circadian rhythm IGI Interproscan
BP GO:0007623 circadian rhythm IEP Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
BP GO:0007623 circadian rhythm TAS Interproscan
BP GO:0009409 response to cold IGI Interproscan
BP GO:0009639 response to red or far red light RCA Interproscan
BP GO:0009651 response to salt stress IEP Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009723 response to ethylene IEP Interproscan
BP GO:0009723 response to ethylene RCA Interproscan
BP GO:0009733 response to auxin IEP Interproscan
BP GO:0009733 response to auxin RCA Interproscan
BP GO:0009737 response to abscisic acid IEP Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009739 response to gibberellin IEP Interproscan
BP GO:0009739 response to gibberellin RCA Interproscan
BP GO:0009751 response to salicylic acid IEP Interproscan
BP GO:0009751 response to salicylic acid RCA Interproscan
BP GO:0009753 response to jasmonic acid IEP Interproscan
BP GO:0009753 response to jasmonic acid RCA Interproscan
BP GO:0010243 response to organonitrogen compound IEP Interproscan
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process RCA Interproscan
MF GO:0019904 protein domain specific binding ISS Interproscan
BP GO:0042752 regulation of circadian rhythm RCA Interproscan
BP GO:0042754 negative regulation of circadian rhythm IMP Interproscan
BP GO:0043496 regulation of protein homodimerization activity IMP Interproscan
MF GO:0043565 sequence-specific DNA binding IDA Interproscan
BP GO:0045892 negative regulation of transcription, DNA-templated IMP Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
BP GO:0048574 long-day photoperiodism, flowering IGI Interproscan
BP GO:0048574 long-day photoperiodism, flowering RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000103 sulfate assimilation IEP Neighborhood
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Neighborhood
MF GO:0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
CC GO:0005884 actin filament IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007602 phototransduction IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009585 red, far-red light phototransduction IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
BP GO:0009954 proximal/distal pattern formation IEP Neighborhood
MF GO:0009973 adenylyl-sulfate reductase activity IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
BP GO:0010100 negative regulation of photomorphogenesis IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
MF GO:0010291 carotene beta-ring hydroxylase activity IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
BP GO:0016119 carotene metabolic process IEP Neighborhood
BP GO:0016122 xanthophyll metabolic process IEP Neighborhood
BP GO:0016123 xanthophyll biosynthetic process IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019379 sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) IEP Neighborhood
BP GO:0019419 sulfate reduction IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
BP GO:0040034 regulation of development, heterochronic IEP Neighborhood
BP GO:0042214 terpene metabolic process IEP Neighborhood
BP GO:0043100 pyrimidine nucleobase salvage IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0043966 histone H3 acetylation IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048506 regulation of timing of meristematic phase transition IEP Neighborhood
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071489 cellular response to red or far red light IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
BP GO:2000030 regulation of response to red or far red light IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!