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  5. Gb_34150

Gb_34150


Description : Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana (sp|p0c7q9|ppr56_arath : 511.0)


Gene families : OG0010115 (Archaeplastida) Phylogenetic Tree(s): OG0010115_tree ,
OG_05_0010163 (LandPlants) Phylogenetic Tree(s): OG_05_0010163_tree ,
OG_06_0009067 (SeedPlants) Phylogenetic Tree(s): OG_06_0009067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34150
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01818p00007440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g22960,... 0.02 Archaeplastida
Zm00001e024139_P001 No alias Pentatricopeptide repeat-containing protein At1g22960,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 205 230
IPR002885 Pentatricopeptide_repeat 547 596
IPR002885 Pentatricopeptide_repeat 442 491
IPR002885 Pentatricopeptide_repeat 267 316
IPR002885 Pentatricopeptide_repeat 340 386
IPR002885 Pentatricopeptide_repeat 652 701
IPR002885 Pentatricopeptide_repeat 718 740
IPR002885 Pentatricopeptide_repeat 403 435
IPR002885 Pentatricopeptide_repeat 508 541
IPR002885 Pentatricopeptide_repeat 613 645
No external refs found!