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  5. Gb_34166

Gb_34166


Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0003666 (Archaeplastida) Phylogenetic Tree(s): OG0003666_tree ,
OG_05_0003648 (LandPlants) Phylogenetic Tree(s): OG_05_0003648_tree ,
OG_06_0005895 (SeedPlants) Phylogenetic Tree(s): OG_06_0005895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34166
Cluster HCCA: Cluster_305

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248990 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
AT4G21660 No alias proline-rich spliceosome-associated (PSP) family protein 0.02 Archaeplastida
MA_258650g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c17_13490V3.1 No alias proline-rich spliceosome-associated (PSP) family protein 0.02 Archaeplastida
Zm00001e013359_P002 No alias component SF3B2 of splicing factor 3B complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 107 152
IPR007180 DUF382 13 98
No external refs found!