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  5. Gb_34257

Gb_34257


Description : Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica (sp|a7lfz6|dcl4_orysj : 264.0)


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0000940 (LandPlants) Phylogenetic Tree(s): OG_05_0000940_tree ,
OG_06_0002089 (SeedPlants) Phylogenetic Tree(s): OG_06_0002089_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34257
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 Archaeplastida
Cre07.g345900 No alias No description available 0.03 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 Archaeplastida
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.02 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.03 Archaeplastida
MA_10436812g0020 No alias Dicer-like protein 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.06 Archaeplastida
MA_10437243g0020 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
MA_108060g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.03 Archaeplastida
MA_9225368g0010 No alias No annotation 0.03 Archaeplastida
Mp7g12090.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.04 Archaeplastida
Pp3c23_3450V3.1 No alias dicer-like 3 0.03 Archaeplastida
Smo86110 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.04 Archaeplastida
Zm00001e041209_P001 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 131 217
IPR003100 PAZ_dom 438 484
No external refs found!