Gb_34264

Description : E3 ubiquitin ligase (RBR-Helicase)

Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008460 (LandPlants) Phylogenetic Tree(s): OG_05_0008460_tree ,
OG_06_0008037 (SeedPlants) Phylogenetic Tree(s): OG_06_0008037_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_34264
Cluster	HCCA: Cluster_328

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00074370	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.04	Archaeplastida
AT3G26560	No alias	ATP-dependent RNA helicase, putative	0.03	Archaeplastida
AT5G13010	EMB3011	RNA helicase family protein	0.03	Archaeplastida
Cpa\|evm.model.tig00000842.2	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
Cpa\|evm.model.tig00000984.27	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.01	Archaeplastida
Cpa\|evm.model.tig00020531.53	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	Archaeplastida
GSVIVT01003434001	No alias	ATP-dependent RNA helicase DEAH11, chloroplastic...	0.03	Archaeplastida
GSVIVT01029863001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
LOC_Os01g11370.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
LOC_Os02g19860.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
LOC_Os07g32430.1	No alias	RNA helicase (Prp16)	0.03	Archaeplastida
MA_10436572g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_277016g0010	No alias	RNA helicase (Prp2)	0.03	Archaeplastida
MA_5383g0010	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
MA_8723931g0010	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
Mp7g03460.1	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
Pp3c15_1470V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c23_5290V3.1	No alias	RNA helicase family protein	0.03	Archaeplastida
Pp3s62_10V3.1	No alias	RNA helicase family protein	0.03	Archaeplastida
Smo82212	No alias	RNA processing.RNA splicing.spliceosome...	0.03	Archaeplastida
Solyc04g014210.3.1	No alias	E3 ubiquitin ligase (RBR-Helicase)	0.04	Archaeplastida
Solyc07g039550.4.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	Archaeplastida
Solyc10g076910.2.1	No alias	RNA helicase (Prp16)	0.04	Archaeplastida
Solyc11g010310.2.1	No alias	E3 ubiquitin ligase (RBR-Helicase)	0.03	Archaeplastida
Zm00001e010450_P001	No alias	RNA helicase (Prp16)	0.03	Archaeplastida
Zm00001e014112_P001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	Archaeplastida
Zm00001e022095_P001	No alias	RNA helicase (Prp2)	0.02	Archaeplastida
Zm00001e038305_P001	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0010921	regulation of phosphatase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0019902	phosphatase binding	IEP	Neighborhood
MF	GO:0019903	protein phosphatase binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0031399	regulation of protein modification process	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0035303	regulation of dephosphorylation	IEP	Neighborhood
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051336	regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	799	874
IPR001650	Helicase_C	453	574
IPR007502	Helicase-assoc_dom	636	730
IPR002867	IBR_dom	1581	1633

External Links

No external refs found!

Gb_34264

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation