AT2G46970 (PIL1)

Aliases : PIL1

Description : phytochrome interacting factor 3-like 1

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0026660 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025073 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G46970
Cluster	HCCA: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00265010	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AMTR_s00024p00250370	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
AT1G27740	RSL4	root hair defective 6-like 4	0.06	Archaeplastida
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.08	Archaeplastida
AT2G14760	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.07	Archaeplastida
AT4G00120	GT140, IND1, IND, EDA33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT4G33880	RSL2	ROOT HAIR DEFECTIVE 6-LIKE 2	0.06	Archaeplastida
AT5G09750	HEC3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.07	Archaeplastida
AT5G43175	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT5G67110	ALC	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	Archaeplastida
GSVIVT01009467001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01009479001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01026516001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
Gb_27869	No alias	transcription factor (bHLH)	0.06	Archaeplastida
LOC_Os01g02110.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g61480.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os03g10770.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
LOC_Os05g46370.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os06g06900.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os06g47980.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os07g39940.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os08g01700.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os08g36740.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os12g39850.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_100071g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_10113879g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10156436g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_29441g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_306658g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_83500g0010	No alias	transcription factor (bHLH)	0.09	Archaeplastida
MA_88831g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Pp3c10_19020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c17_15380V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c25_13740V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo405220	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc01g107140.3.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc02g091440.2.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Solyc02g093280.2.1	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Solyc04g077960.1.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc04g078790.3.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
Solyc09g005070.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc12g088380.1.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e015610_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e020012_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e020477_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e025656_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e027758_P002	No alias	transcription factor (bHLH)	0.08	Archaeplastida
Zm00001e029147_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e034339_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e035422_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e038765_P001	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Zm00001e041668_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009641	shade avoidance	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	IMP	Interproscan
BP	GO:0010017	red or far-red light signaling pathway	IEP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
MF	GO:0005496	steroid binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006649	phospholipid transfer to membrane	IEP	Neighborhood
MF	GO:0008142	oxysterol binding	IEP	Neighborhood
MF	GO:0008327	methyl-CpG binding	IEP	Neighborhood
MF	GO:0008395	steroid hydroxylase activity	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009704	de-etiolation	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009720	detection of hormone stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009726	detection of endogenous stimulus	IEP	Neighborhood
BP	GO:0009727	detection of ethylene stimulus	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0010030	positive regulation of seed germination	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010114	response to red light	IEP	Neighborhood
BP	GO:0010218	response to far red light	IEP	Neighborhood
BP	GO:0010268	brassinosteroid homeostasis	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0015914	phospholipid transport	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016630	protochlorophyllide reductase activity	IEP	Neighborhood
MF	GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0032934	sterol binding	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0042761	very long-chain fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0042814	monopolar cell growth	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0046620	regulation of organ growth	IEP	Neighborhood
BP	GO:0046622	positive regulation of organ growth	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048462	carpel formation	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048639	positive regulation of developmental growth	IEP	Neighborhood
BP	GO:0048825	cotyledon development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051457	maintenance of protein location in nucleus	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0055088	lipid homeostasis	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0070542	response to fatty acid	IEP	Neighborhood
BP	GO:0071398	cellular response to fatty acid	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
BP	GO:0080126	ovary septum development	IEP	Neighborhood
BP	GO:1905328	plant septum development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	233	279

External Links

No external refs found!

AT2G46970 (PIL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation