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  5. AT2G47280

AT2G47280


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G47280
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01000525001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.03 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.03 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_18312g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_6149868g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g065350.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e029074_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0009505 plant-type cell wall ISS Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005496 steroid binding IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008142 oxysterol binding IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0031221 arabinan metabolic process IEP Neighborhood
BP GO:0031222 arabinan catabolic process IEP Neighborhood
MF GO:0032934 sterol binding IEP Neighborhood
BP GO:0044403 symbiont process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 35 323
No external refs found!